Browsing by Author "Meneses J."

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A structure-from-motion pipeline for topographic reconstructions using unmanned aerial vehicles and open source software
(Springer Verlag, 2018) Meza J.; Marrugo A.G.; Sierra E.; Guerrero M.; Meneses J.; Romero L.A.; Serrano C. J.E.; Martínez-Santos, Juan Carlos
In recent years, the generation of accurate topographic reconstructions has found applications ranging from geomorphic sciences to remote sensing and urban planning, among others. The production of high resolution, high-quality digital elevation models (DEMs) requires a significant investment in personnel time, hardware, and software. Photogrammetry offers clear advantages over other methods of collecting geomatic information. Airborne cameras can cover large areas more quickly than ground survey techniques, and the generated Photogrammetry-based DEMs often have higher resolution than models produced with other remote sensing methods such as LIDAR (Laser Imaging Detection and Ranging) or RADAR (radar detection and ranging). In this work, we introduce a Structure from Motion (SfM) pipeline using Unmanned Aerial Vehicles (UAVs) for generating DEMs for performing topographic reconstructions and assessing the microtopography of a terrain. SfM is a computer vision technique that consists in estimating the 3D coordinates of many points in a scene using two or more 2D images acquired from different positions. By identifying common points in the images both the camera position (motion) and the 3D locations of the points (structure) are obtained. The output from an SfM stage is a sparse point cloud in a local XYZ coordinate system. We edit the obtained point in MeshLab to remove unwanted points, such as those from vehicles, roofs, and vegetation. We scale the XYZ point clouds using Ground Control Points (GCP) and GPS information. This process enables georeferenced metric measurements. For the experimental verification, we reconstructed a terrain suitable for subsequent analysis using GIS software. Encouraging results show that our approach is highly cost-effective, providing a means for generating high-quality, low-cost DEMs. © Springer Nature Switzerland AG 2018.
Evaluating the influence of camera and projector lens distortion in 3D reconstruction quality for fringe projection profilometry
(OSA - The Optical Society, 2018) Vargas R.; Marrugo A.G.; Pineda J.; Meneses J.; Romero L.A.
We study the influence of geometric distortions of the camera and projector lenses on 3D reconstruction quality for fringe projection profilometry. Experimental results on real objects and their 3D models show the accuracy is improved. © 2018 The Author(s).
Robust automated reading of the skin prick test via 3D imaging and parametric surface fitting
(Public Library of Science, 2019) Pineda J.; Vargas R.; Romero L.A.; Marrugo J.; Meneses J.; Marrugo A.G.
The conventional reading of the skin prick test (SPT) for diagnosing allergies is prone to inter- and intra-observer variations. Drawing the contours of the skin wheals from the SPT and scanning them for computer processing is cumbersome. However, 3D scanning technology promises the best results in terms of accuracy, fast acquisition, and processing. In this work, we present a wide-field 3D imaging system for the 3D reconstruction of the SPT, and we propose an automated method for the measurement of the skin wheals. The automated measurement is based on pyramidal decomposition and parametric 3D surface fitting for estimating the sizes of the wheals directly. We proposed two parametric models for the diameter estimation. Model 1 is based on an inverted Elliptical Paraboloid function, and model 2 on a super-Gaussian function. The accuracy of the 3D imaging system was evaluated with validation objects obtaining transversal and depth accuracies within ± 0.1 mm and ± 0.01 mm, respectively. We tested the method on 80 SPTs conducted in volunteer subjects, which resulted in 61 detected wheals. We analyzed the accuracy of the models against manual reference measurements from a physician and obtained that the parametric model 2 on average yields diameters closer to the reference measurements (model 1: -0.398 mm vs. model 2: -0.339 mm) with narrower 95% limits of agreement (model 1: [-1.58, 0.78] mm vs. model 2: [-1.39, 0.71] mm) in a Bland-Altman analysis. In one subject, we tested the reproducibility of the method by registering the forearm under five different poses obtaining a maximum coefficient of variation of 5.24% in the estimated wheal diameters. The proposed method delivers accurate and reproducible measurements of the SPT. © 2019 Pineda et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Toward an automatic 3D measurement of skin wheals from skin prick tests
(SPIE, 2019) Marrugo A.G.; Romero L.A.; Pineda J.; Vargas R.; Altamar Mercado, Hernando; Marrugo J.; Meneses J.; Harding K.G.; Zhang, Song
The skin prick test (SPT) is the standard method for the diagnosis of allergies. It consists in placing an array of allergen drops on the skin of a patient, typically the volar forearm, and pricking them with a lancet to provoke a specific dermal reaction described as a wheal. The diagnosis is performed by measuring the diameter of the skin wheals, although wheals are not usually circular which leads to measurement inconsistencies. Moreover, the conventional approach is to measure their size with a ruler. This method has been proven prone to inter- and intra-observer variations. We have developed a 3D imaging system for the 3D reconstruction of the SPT. Here, we describe the proposed method for the automatic measurements of the wheals based on 3D data processing to yield reliable results. The method is based on a robust parametric fitting to the 3D data for obtaining the diameter directly. We evaluate the repeatability of the system under 3D reconstructions for different object poses. Although the system provides higher accuracy in the measurement, we compare the results to those produced by a physician. Copyright © 2019 SPIE.
Wide-field 3D imaging with an LED pattern projector for accurate skin feature measurements via Fourier transform profilometry
(SPIE, 2019) Marrugo A.G.; Romero L.A.; Meneses J.; Harding K.G.; Zhang, Song
Accurate 3D imaging of human skin features with structured light methods is hindered by subsurface scattering, the presence of hairs and patient movement. In this work, we propose a wide-field 3D imaging system capable of reconstructing large areas, e.g. the whole surface of the forearm, with an axial accuracy in the order of 10 microns for measuring scattered skin features, like lesions. By pushing the limits of grating projection we obtain high-quality fringes within a limited depth of field. We use a second projector for accurate positioning of the object. With two or more cameras we achieve independent 3D reconstructions automatically merged in a global coordinate system. With the positioning strategy, we acquire two consecutive images for absolute phase retrieval using Fourier Transform Profilometry to ensure accurate phase-to-height mapping. Encouraging experimental results show that the system is able to measure precisely skin features scattered in a large area. Copyright © 2019 SPIE.