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The origin of Humboldt and Bonpland's holotype of Oncidium ornithorhynchum, clarified using +200-year-old DNA

dc.creatorContreras-Ortiz N.
dc.creatorRodríguez-García T.
dc.creatorQuintanilla S.
dc.creatorBernal-Villegas J.
dc.creatorMadriñán S.
dc.creatorGómez-Gutiérrez A.
dc.date.accessioned2020-03-26T16:33:02Z
dc.date.available2020-03-26T16:33:02Z
dc.date.issued2019
dc.identifier.citationTaxon; Vol. 68, Núm. 3; pp. 471-480
dc.identifier.issn00400262
dc.identifier.urihttps://hdl.handle.net/20.500.12585/9139
dc.description.abstractOncidium ornithorhynchum, an epiphytic orchid characterized by erect, pyramidal inflorescences and small yellow flowers, is found in the northern Andes. However, according to the protologue, the type was collected in Mexico during Humboldt and Bonpland's American expedition (1800–1804). To clarify this problem, we extracted DNA from the ancient holotype. Short-range PCRs for plastid (matK-trnK, trnH-psbA, ycf1) and nuclear (nrITS) markers were established and used to infer its phylogenetic placement with several related Central American and Andean orchid species. This provided well-supported and close relationships of the holotype with other North Andean orchids, proving that the locus classicus was confounded. Also O. sotoanum from Mexico, with which O. ornithorhynchum has often been confused, was only distantly related. © 2019 International Association for Plant Taxonomyeng
dc.format.mediumRecurso electrónico
dc.format.mimetypeapplication/pdf
dc.language.isoeng
dc.publisherJohn Wiley and Sons Inc.
dc.rights.urihttp://creativecommons.org/licenses/by-nc-nd/4.0/
dc.sourcehttps://www.scopus.com/inward/record.uri?eid=2-s2.0-85071155632&doi=10.1002%2ftax.12067&partnerID=40&md5=b12d511039183cb8d7bfc38f6d814d7b
dc.titleThe origin of Humboldt and Bonpland's holotype of Oncidium ornithorhynchum, clarified using +200-year-old DNA
dcterms.bibliographicCitationAmes, M., Spooner, D.M., DNA from herbarium specimens settles a controversy about origins of the European potato (2008) Amer. J. Bot., 95, pp. 252-257. , https://doi.org/10.3732/ajb.95.2.252, &
dcterms.bibliographicCitationAndreasen, K., Manktelow, M., Razafimandimbison, S.G., Successful DNA amplification of a more than 200-year-old herbarium specimen: Recovering genetic material from the Linnaean era (2009) Taxon, 58, pp. 959-962. , https://doi.org/10.1002/tax.583023, &
dcterms.bibliographicCitationBallesteros Pintor, D.P., (2017) Estrategia de reproducción sexual de Oncidium ornithorhynchum Kunth (Orchidaceae: Cymbidieae) en un fragmento de bosque en el municipio de La Calera, Cundinamarca, , http://bdigital.unal.edu.co/56946/7/dionnepaolaballesterospintor.2017.pdf, M.Sc. Thesis, Universidad Nacional de Colombia, Bogotá
dcterms.bibliographicCitation(2016) Geneious, version 9.1.7, , https://www.geneious.com/, Auckland Biomatters
dcterms.bibliographicCitationBlattner, F.R., Direct amplification of the entire ITS region from poorly preserved plant material using recombinant PCR (1999) BioTechniques, 27, pp. 1180-1186. , https://doi.org/10.2144/99276st04
dcterms.bibliographicCitationCarstens, B.C., Pelletier, T.A., Reid, N.M., Satler, J.D., How to fail at species delimitation (2013) Molec. Ecol., 22, pp. 4369-4383. , https://doi.org/10.1111/mec.12413, &
dcterms.bibliographicCitationChase, M.W., Oncidium (2009) Genera orchidacearum, 5, pp. 309-314. , Pridgeon, A.M., Cribb, P.J., Chase, M.W., &, Rasmussen, F.N., (eds.),, Epidendroideae, part 2., Oxford, Oxford University Press
dcterms.bibliographicCitationChase, M.W., Williams, N.H., De Faria, A.D., Neubig, K.M., Amaral, M.D.C.E., Whitten, W.M., Floral convergence in Oncidiinae (Cymbidieae
dcterms.bibliographicCitationOrchidaceae): An expanded concept of Gomesa and a new genus Nohawilliamsia (2009) Ann. Bot. (Oxford), 104, pp. 387-402. , https://doi.org/10.1093/aob/mcp067, &
dcterms.bibliographicCitationChoi, J., Lee, H., Shipunov, A., All that is gold does not glitter? Age, taxonomy, and ancient plant DNA quality (2015) PeerJ, 3. , https://doi.org/10.7717/peerj.1087, &
dcterms.bibliographicCitationDalström, S., Orchids smarter than scientists – An approach to Oncidiinae (Orchidaceae) taxonomy (2003) Lankesteriana, 2, pp. 33-36
dcterms.bibliographicCitationDalström, S., Higgins, W.E., New combinations and transfers to Odontoglossum Oncidiinae (Orchidaceae): Avoid creating new names (2016) Harvard Pap. Bot., 21, pp. 97-104. , https://doi.org/10.3100/hpib.v21iss1.2016.n8, &
dcterms.bibliographicCitationDavies, K.L., Stpiczyńska, M., Comparative histology of floral elaiophores in the orchids Rudolfiella picta (Schltr.) Hoehne (Maxillariinae sensu lato) and Oncidium ornithorhynchum H.B.K. (Oncidiinae sensu lato) (2009) Ann. Bot. (Oxford), 104, pp. 221-234. , https://doi.org/10.1093/aob/mcp119, &
dcterms.bibliographicCitationDoyle, J., Doyle, J., A rapid DNA isolation procedure for small quantities of fresh leaf tissue (1987) Phytochem. Bull. Bot. Soc. Amer., 19, pp. 11-15. , &
dcterms.bibliographicCitationFourment, M., Holmes, E.C., Seqotron: A user-friendly sequence editor for Mac OS X. B. M (2016) C. Res. Notes, 9, p. 106. , https://doi.org/10.1186/s13104-016-1927-4, &
dcterms.bibliographicCitationGolenberg, E.M., Giannasi, D.E., Clegg, M.T., Smiley, C.J., Durbin, M., Henderson, D., Zurawski, G., Chloroplast DNA sequence from a Miocene Magnolia species (1990) Nature, 344, pp. 656-658. , https://doi.org/10.1038/344656a0, &
dcterms.bibliographicCitationHarris, S.A., DNA analysis of tropical plant species: An assessment of different drying methods (1994) Pl. Syst. Evol., 188, pp. 57-64. , https://doi.org/10.1007/BF00937835
dcterms.bibliographicCitationHart, M.L., Forrest, L.L., Nicholls, J.A., Kidner, C.A., Retrieval of hundreds of nuclear loci from herbarium specimens (2016) Taxon, 65, pp. 1081-1092. , https://doi.org/10.12705/655.9, &
dcterms.bibliographicCitationHumboldt, F.W.H.A., Bonpland, A.J., Kunth, K.S., (1816) Nova genera et species plantarum, 1. , https://doi.org/10.5962/bhl.title.640, &, (“1815”)., [quarto ed.], Lutetiae Parisiorum [Paris], sumtibus Librariae Graeco-Latino-Germanicae
dcterms.bibliographicCitationJankowiak, K., Buczkowska, K., Szweykowska-Kulinska, Z., Successful extraction of DNA from 100-year-old herbarium specimens of the liverwort Bazzania trilobata (2005) Taxon, 54, pp. 335-336. , https://doi.org/10.2307/25065361, &
dcterms.bibliographicCitationJiménez-Machorro, R., Hágsater, E., Oncidium ornithorhynchum, una especie mal interpretada y un nombre para una vieja especie: Oncidium sotoanum (Orchidaceae) (2010) Lankesteriana, 9, pp. 411-422. , https://doi.org/10.15517/lank.v0i0.12077, &
dcterms.bibliographicCitationKatoh, K., Standley, D.M., MAFFT multiple sequence alignment software version 7: Improvements in performance and usability (2013) Molec. Biol. Evol., 30, pp. 772-780. , https://doi.org/10.1093/molbev/mst010, &
dcterms.bibliographicCitationKearse, M., Moir, R., Wilson, A., Stones-Havas, S., Cheung, M., Sturrock, S., Buxton, S., Drummond, A., Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data (2012) Bioinformatics, 28, pp. 1647-1649. , https://doi.org/10.1093/bioinformatics/bts199, &
dcterms.bibliographicCitationKolanowska, M., Szlachetko, D.L., Problems with generic delimitation in the Odontoglossum complex (Orchidaceae, Oncidiinae) and an attempt for a solution (2016) Pl. Syst. Evol., 302, pp. 203-217. , https://doi.org/10.1007/s00606-015-1254-6, &
dcterms.bibliographicCitationLanfear, R., Calcott, B., Ho, S.Y.W., Guindon, S., PartitionFinder: Combined selection of partitioning schemes and substitution models for phylogenetic analyses (2012) Molec. Biol. Evol., 29, pp. 1695-1701. , https://doi.org/10.1093/molbev/mss020, &
dcterms.bibliographicCitationLanfear, R., Frandsen, P.B., Wright, A.M., Senfeld, T., Calcott, B., PartitionFinder 2: New methods for selecting partitioned models of evolution for molecular and morphological phylogenetic analyses (2016) Molec. Biol. Evol., 34, pp. 772-773. , https://doi.org/10.1093/molbev/msw260, &
dcterms.bibliographicCitationLeliaert, F., Verbruggen, H., Wysor, B., De Clerck, O., DNA taxonomy in morphologically plastic taxa: Algorithmic species delimitation in the Boodlea complex (Chlorophyta: Cladophorales) (2009) Molec. Phylogen. Evol., 53, pp. 122-133. , https://doi.org/10.1016/j.ympev.2009.06.004, &
dcterms.bibliographicCitationLister, D.L., Bower, M.A., Howe, C.J., Jones, M.K., Extraction and amplification of nuclear DNA from herbarium specimens of emmer wheat: A method for assessing DNA preservation by maximum amplicon length recovery (2008) Taxon, 57, pp. 254-258. , &
dcterms.bibliographicCitationMaddison, W.P., Maddison, D.R., (2017) Mesquite: A modular system for evolutionary analysis, , http://mesquiteproject.org, &, version 3.2
dcterms.bibliographicCitationMazo, L.C., Gómez-Gutiérrez, A., Quintanilla-Quintero, S.R., Bernal, J.E., Ortiz Valdivieso, P., Extraction and amplification of DNA from orchid exsiccates conserved for more than half a century in a herbarium in Bogotá, Colombia (2012) Lankesteriana, 12, pp. 121-129. , https://doi.org/10.15517/lank.v0i0.11762, &
dcterms.bibliographicCitationMazo, L.C., Gómez-Gutiérrez, A., Quintanilla, S.R., Bernal, J.E., Ortiz Valdivieso, P., Consideraciones sobre la historia de la prioridad taxonómica de Oncidium ornithorhynchum (2014) Lankesteriana, 13, pp. 337-351. , https://doi.org/10.15517/lank.v13i3.14417, &
dcterms.bibliographicCitationMiller, M.A., Pfeiffer, W., Schwartz, T., Creating the CIPRES Science Gateway for inference of large phylogenetic trees (2010) Proceedings of the Gateway Computing Environments Workshop (GCE), pp. 45-52. , https://doi.org/10.1109/GCE.2010.5676129, &, New Orleans, Louisiana, 14 Nov 2010., Piscataway, IEEE
dcterms.bibliographicCitationNeubig, K.M., Whitten, W.M., Williams, N.H., Blanco, M.A., Endara, L., Burleigh, J.G., Silvera, K., Chase, M.W., Generic recircumscriptions of Oncidiinae (Orchidaceae: Cymbidieae) based on maximum likelihood analysis of combined DNA datasets (2012) Bot. J. Linn. Soc., 168, pp. 117-146. , https://doi.org/10.1111/j.1095-8339.2011.01194.x, &
dcterms.bibliographicCitationQuintanilla-Quintero, S.R., Ortiz Valdivieso, P., Bernal, J.E., Gómez-Gutiérrez, A., Phylogenetic relationships among genera of the subtribe Oncidiinae (Epidendroideae: Orchidaceae) and a new genus: Santanderella (2011) Phytologia, 93, pp. 388-406. , &
dcterms.bibliographicCitationRodríguez García, M.T., (2015) Evaluación y adaptación de un protocolo de extracción y amplificación de ADN en orquídeas conservadas en herbarios en un exsicado de Oncidium ornithorhynchum con más de 200 años, , Published B.Sc. Thesis, Pontificia Universidad Javeriana, Bogotá, Colombia
dcterms.bibliographicCitationRonquist, F., Teslenko, M., Van der Mark, P., Ayres, D.L., Darling, A., Höhna, S., MrBayes 3.2: Efficient Bayesian phylogenetic inference and model choice across a large model space (2012) Syst. Biol., 61, pp. 539-542. , https://doi.org/10.1093/sysbio/sys029, &
dcterms.bibliographicCitationSärkinen, T., Staats, M., Richardson, J.E., Cowan, R.S., Bakker, F.T., How to open the treasure chest? Optimising DNA extraction from herbarium specimens (2012) PLoS ONE, 7. , https://doi.org/10.1371/journal.pone.0043808, &
dcterms.bibliographicCitationStaats, M., Cuenca, A., Richardson, J.E., Ginkel, R.V.V., Petersen, G., Seberg, O., Bakker, F.T., DNA damage in plant herbarium tissue (2011) PLoS ONE, 6. , https://doi.org/10.1371/journal.pone.0028448, &
dcterms.bibliographicCitationStamatakis, A., RAxML version 8: A tool for phylogenetic analysis and post-analysis of large phylogenies (2014) Bioinformatics, 30, pp. 1312-1313. , https://doi.org/10.1093/bioinformatics/btu033
dcterms.bibliographicCitationSun, Y., Skinner, D.Z., Liang, G.H., Hulbert, S.H., Phylogenetic analysis of Sorghum and related taxa using internal transcribed spacers of nuclear ribosomal DNA (1994) Theor. Appl. Genet., 89, pp. 26-32. , https://doi.org/10.1007/BF00226978, &
dcterms.bibliographicCitationSzlachetko, D.L., Kolanowska, M., Reconsideration of Heteranthocidium (Oncidiinae, Orchidaceae): New species and taxonomic transfers (2015) Pl. Syst. Evol., 301, pp. 1793-1805. , https://doi.org/10.1007/s00606-014-1189-3, &
dcterms.bibliographicCitationSzlachetko, D.L., Mytnik-Ejsmont, J., Romowicz, A., Genera et species orchidalium. 14. Oncidieae (2006) Polish Bot. J., 51, pp. 53-55. , &
dcterms.bibliographicCitationSzlachetko, D.L., Kolanowska, M., Naczk, A., Gómiak, M., Dudek, M., Rutkowski, P., Chiron, G., Taxonomy of Cyrtochilum-alliance (Orchidaceae) in the light of molecular and morphological data (2017) Bot. Stud., 58 (8). , https://doi.org/10.1186/s40529-017-0164-z, &
dcterms.bibliographicCitationVaidya, G., Lohman, D.J., Meier, R., SequenceMatrix: Concatenation software for the fast assembly of multi-gene datasets with character set and codon information (2011) Cladistics, 27, pp. 171-180. , https://doi.org/10.1111/j.1096-0031.2010.00329.x, &
dcterms.bibliographicCitationXu, D.H., Abe, J., Sakai, M., Kanazawa, A., Shimamoto, Y., Sequence variation of non-coding regions of chloroplast DNA of soybean and related wild species and its implications for the evolution of different chloroplast haplotypes (2000) Theor. Appl. Genet., 101, pp. 724-732. , https://doi.org/10.1007/s001220051537, &
datacite.rightshttp://purl.org/coar/access_right/c_16ec
oaire.resourceTypehttp://purl.org/coar/resource_type/c_6501
oaire.versionhttp://purl.org/coar/version/c_970fb48d4fbd8a85
dc.type.driverinfo:eu-repo/semantics/article
dc.type.hasversioninfo:eu-repo/semantics/publishedVersion
dc.identifier.doi10.1002/tax.12067
dc.subject.keywordsHerbarium DNA amplification
dc.subject.keywordsMolecular phylogenetics
dc.subject.keywordsOncidium ornithorhynchum
dc.subject.keywordsOncidium sotoanum
dc.subject.keywordsSouth America
dc.subject.keywordsAmplification
dc.subject.keywordsDNA
dc.subject.keywordsEpiphyte
dc.subject.keywordsHerb
dc.subject.keywordsHerbarium
dc.subject.keywordsMolecular ecology
dc.subject.keywordsPhylogenetics
dc.subject.keywordsAndes
dc.subject.keywordsCanada
dc.subject.keywordsHumboldt
dc.subject.keywordsMexico [North America]
dc.subject.keywordsSaskatchewan
dc.subject.keywordsOncidium
dc.subject.keywordsOncidium ornithorhynchum
dc.subject.keywordsOrchidaceae
dc.rights.accessrightsinfo:eu-repo/semantics/restrictedAccess
dc.rights.ccAtribución-NoComercial 4.0 Internacional
dc.identifier.instnameUniversidad Tecnológica de Bolívar
dc.identifier.reponameRepositorio UTB
dc.type.spaArtículo
dc.identifier.orcid57191284375
dc.identifier.orcid57210643915
dc.identifier.orcid56027344300
dc.identifier.orcid6504309639
dc.identifier.orcid23985665400
dc.identifier.orcid57202242831


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